基于多原发肺癌的不同浸润等级肺腺癌癌旁组织单细胞转录组图谱分析

Analysis of single-cell transcriptome atlas in paracancerous tissues of lung adenocarcinoma with different invasion grades of multiple primary lung cancers

  • 摘要: 背景 肺癌是全球癌症相关死亡首要原因,其演进分子机制与肿瘤微环境异质性尚待深入阐明。肺腺癌由癌前病变逐步进展至浸润性腺癌。多原发肺癌可作为理想体内模型,能在一定程度排除个体差异干扰的前提下解析肿瘤演进全过程。目的 本研究旨在以多原发肺癌为模型,利用单细胞转录组测序技术,系统描绘不典型腺瘤样增生、微浸润性腺癌和浸润性腺癌的癌旁组织以及远端正常肺组织的单细胞图谱,分析癌旁组织在肺腺癌进展过程中的基因表达变化,从而为肺腺癌进展机制研究提供新视角。方法 本研究经手术获取11 例样本(7 例癌旁组织样本和4 例远端正常肺组织样本),开展单细胞转录组测序,依次完成细胞聚类注释、Wilcoxon 秩和检验筛选差异基因、CellPhoneDB 细胞互作分析,以P<0.05 为差异具有统计学意义。结果 共获得205154 个有效单细胞,鉴定出9 种主要细胞类型;发现癌旁组织细胞组成随病变进展呈阶段性重塑,其中AT2 细胞在AAH阶段占比异常升高至近100%,随后在MIA 阶段下降并伴随气道上皮细胞比例上升;AT2 细胞在AAH、MIA和IA 期的癌旁组织中差异基因依次为2150、416、339 个;细胞间互作分析揭示,成纤维细胞与内皮细胞的通讯从AAH阶段起持续增强,形成促肿瘤微环境的核心枢纽。癌旁组织是肺腺癌早期演进的关键功能性微环境,AT2 细胞异常活化、免疫抑制失衡及基质细胞主导的通讯网络是其核心调控机制。结论 癌旁微环境不只是肿瘤发生后的被动继发改变,或可主动参与调控肺腺癌早期恶性转化进程。

     

    Abstract: Background Lung cancer is the leading cause of cancer-related deaths worldwide, and its evolutionary molecular mechanisms and the heterogeneity of the tumor microenvironment remain to be further elucidated. Lung adenocarcinoma progresses gradually from precancerous lesions to invasive adenocarcinoma. Multiple primary lung cancers can serve as an ideal in vivo model, enabling the analysis of the entire process of tumor evolution while eliminating the interference of individual differences to a certain extent. Objective This study aims to take multiple primary lung cancer as a model, adopt single-cell transcriptome sequencing technology to systematically map the single-cell atlases of paracancerous tissues and distal normal lung tissues corresponding to atypical adenomatous hyperplasia, minimally invasive adenocarcinoma and invasive adenocarcinoma, analyze the gene expression alterations of paracancerous tissues during the progression of lung adenocarcinoma, so as to offer a new perspective for researches on the progression mechanism of lung adenocarcinoma.Methods In this study, 11 samples (7 paracancerous tissue samples and 4 distal normal lung tissue samples) were obtained via surgery for single-cell transcriptome sequencing. Cell clustering and annotation, screening of differentially expressed genes using the Wilcoxon rank-sum test, and cell-cell interaction analysis with CellPhoneDB were performed sequentially. A P value less than 0.05 was considered statistically significant. Results A total of 205, 154 valid single cells were obtained, and 9 major cell types were identified. It was found that the cellular composition of paracancerous tissues undergoes staged remodeling as lesions progress. Specifically, the proportion of AT2 cells abnormally surged to nearly 100% at the AAH stage, then decreased at the MIA stage alongside an elevated percentage of airway epithelial cells. The numbers of differentially expressed genes in AT2 cells within paracancerous tissues at the AAH, MIA and IA stages were 2150, 416 and 339 respectively. Intercellular interaction analysis revealed that communication between fibroblasts and endothelial cells continuously intensified starting from the AAH stage, forming a core hub that fosters a pro-tumor microenvironment. Paracancerous tissues serve as a critical functional microenvironment for the early progression of lung adenocarcinoma, with aberrant activation of AT2 cells, disrupted immunosuppression, and stromal cell-dominated communication networks acting as its core regulatory mechanisms. Conclusion The paracancerous microenvironment is not merely a passive secondary alteration following tumorigenesis; it may actively participate in regulating the early malignant transformation process of lung adenocarcinoma.

     

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