人星状病毒Ⅰ型衣壳蛋白序列分析

Sequences of human astrovirus 1 capsid protein

  • 摘要: 目的 分析人星状病毒Ⅰ型(human astroviruses 1, HAstV1)衣壳蛋白序列,预测其空间结构、理化参数及其生物学特性。 方法 选择Genebank序列号L23513中衣壳蛋白基因序列,联合应用生物软件DNAstar和互联网在线数据库分析其二级结构、三级结构、分子质量、理论等电点、氨基酸组成、半衰期、不稳定系数、脂肪系数、总平均疏水性、亲水性、柔韧性、抗原指数和表面可及性等。 结果 HAstV1衣壳蛋白空间构象比较规则,理化参数较稳定,具有较高的免疫原性。 结论 本研究分析了衣壳蛋白空间结构、理化参数和生物学特性,为人星状病毒的致病机制的研究及其防治与检测奠定了基础。

     

    Abstract: Objective To study the spatial structure, physical and chemical parameters, and biological nature of human astrovirus 1 (HAstV1) capsid protein by analyzing its sequences. Methods The sequences of L23513-capsid protein were accessed from Genbank. Its secondary and tertiary structure, molecular weight, theoretical isoelectric point, amino acid composition, half-life, unstable factor, aliphatic factor, total average hydrophobicity, hydropathicity, flexibility, antigenic index and surface probability were analyzed with DNAstar and on-line internet databases. Results The spatial confirmation of HAstV1 capsid protein was relatively regular, with stable physical and chemical parameters, and a high immunogenicity. Conclusion The spatial structure, physical and chemical parameters, and biological nature of HAstV1 capsid protein, analyzed in this study, lay a foundation for the further study of its pathogenic mechanism and its prevention and detection.

     

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