人miR-34a靶基因的生物信息学分析及载体构建
Bioinformatics analysis of hsa-miR-34a target genes and construction of green fluorescence protein reporter gene vectors
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摘要: 目的 对人miR-34a(hsa-miR-34a)下游靶基因进行预测,并构建含自噬相关基因靶结合序列的GFP报告基因载体。方法 使用TargetScan Release 5.1和RNA22软件分析hsa-miR-34a可能的靶基因,并利用Gominer软件对靶基因功能进行分析。根据预测结果,合成含自噬相关基因hsa-miR-34a靶序列的寡核苷酸,以pEGFPC2为载体构建系列质粒,并检测各载体的真核表达情况。结果 预测结果显示hsa-miR-34a共有2904个下游靶基因,功能涵盖生物过程、细胞组分、分子功能三大类,其中与自噬作用直接相关的靶基因有beclin 1和sestrin 2。构建含beclin 1和sestrin 2作用位点的GFP载体共5个,质粒转染Hela细胞后在荧光显微镜下可见绿色荧光。结论 成功构建hsa-miR-34a下游自噬相关基因靶位点序列GFP报告基因载体,为进一步研究hsa-miR-34a对自噬的调控作用奠定基础。Abstract: Objective To predict the hsa-miR-34a target genes and construct green fluorescence protein(GFP) reporter gene vectors containing autophagy-associated target genes. Methods Biological targets of hsa-miR-34a were predicted using the online program TargetScan Release 5.1 and RNA22.Their molecular function was analyzed using software Gominer.Oligonucleotide sequences of hsa-miR-34a binding sites were synthesized and cloned into pEGFPC2 after digestion with EcoR I and BamH I.Recombinant plasmids was confirmed by DNA sequencing.Plasmids were transfected into Hela cells with Lipofectamine 2 000.Expression of GFP in Hela cells was observed under a fluorescence microscope. Results A total of 2 904 targets were found in hsa-miR-34a.The functions of hsa-miR-34a included three knowledge domains:molecular function,biological process and cellular component.Two and three miR-34a target islands were observed in autophagy relative genes,beclin1 and sestrin 2 mRNA,respectively.Sequence analysis showed the insert sequence was correct.Gene transfection was mediated by Lipofectamine 2 000 24h later.Fluorescence microscopy displayed that the GFP was expressed in Hela cells. Conclusion The construction of GFP reporter gene vectors has laid a foundation for studying the role of hsa-miR-34a in the molecular mechanism of autophagy.
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