刘超, 苏龙翔, 方向群, 刘长庭. 铜绿假单胞菌LCT-PA220菌株全基因组序列测定与分析[J]. 解放军医学院学报, 2014, 35(7): 738-740,758. DOI: 10.3969/j.issn.2095-5227.2014.07.025
引用本文: 刘超, 苏龙翔, 方向群, 刘长庭. 铜绿假单胞菌LCT-PA220菌株全基因组序列测定与分析[J]. 解放军医学院学报, 2014, 35(7): 738-740,758. DOI: 10.3969/j.issn.2095-5227.2014.07.025
LIU Chao, SU Long-xiang, FANG Xiang-qun, LIU Chang-ting. Whole genome sequencing and analysis of Pseudomonas aeruginosa strain LCT-PA220[J]. ACADEMIC JOURNAL OF CHINESE PLA MEDICAL SCHOOL, 2014, 35(7): 738-740,758. DOI: 10.3969/j.issn.2095-5227.2014.07.025
Citation: LIU Chao, SU Long-xiang, FANG Xiang-qun, LIU Chang-ting. Whole genome sequencing and analysis of Pseudomonas aeruginosa strain LCT-PA220[J]. ACADEMIC JOURNAL OF CHINESE PLA MEDICAL SCHOOL, 2014, 35(7): 738-740,758. DOI: 10.3969/j.issn.2095-5227.2014.07.025

铜绿假单胞菌LCT-PA220菌株全基因组序列测定与分析

Whole genome sequencing and analysis of Pseudomonas aeruginosa strain LCT-PA220

  • 摘要: 目的 全基因组测序和分析铜绿假单胞菌LCT-PA220菌株,研究空间因素对细菌全基因组的影响,为宇航员的保健奠定基础。 方法 通过革兰染色鉴定LCT-PA220属性,提取基因DNA、构建文库并上机测序;加工处理原始测序数据后进行基因组组装、注释和分析。 结果 铜绿假单胞菌LCT-PA220菌株革兰染色阴性,基因组为6.87M,包括5 829个编码序列,平均长度为962 bp,预测到为54个tRNA基因,COG数据库和KEGG数据库比对共注释到22组COG功能和32条KEGG信号通路。 结论 铜绿假单胞菌LCT-PA220菌株全基因组测序和基因组清楚,为后续对该菌株的研究打下了基础。

     

    Abstract: Objective To study the influence of the spatial factor which is closely associated with spacemen's health, the whole genome sequence of Pseudomonas aeruginosa strain LCT-PA220. Methods The characteristic was identified by gram stain examination. Then genomic DNA was extracted from LCT-PA220 strain and the library was constructed and followed by sequencing. The raw date were fltered, assembled into genome, annotated and analyzed. Results The identify of LCT-PA220 strain was gram-negative bacteria whose genome was 6.87M containing 54 tRNA genes and 5 829 coding sequences with 962 bp average gene length. COG and KEGG annotation analysis revealed 22 COG functions and 32 KEGG pathways, respectively. Conclusion The whole genome of LCT-PA220 strain is sequenced and annotated well, which paves the way for further study of this strain.

     

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